"""Contains the CategoricalArchive."""
from __future__ import annotations
from collections.abc import Collection, Hashable, Iterator
from typing import Literal, overload
import numpy as np
from numpy.typing import ArrayLike, DTypeLike
from numpy_groupies import aggregate_nb as aggregate
from ribs._utils import (
check_batch_shape,
check_shape,
validate_batch,
validate_single,
)
from ribs.archives._archive_base import ArchiveBase
from ribs.archives._archive_data_frame import ArchiveDataFrame
from ribs.archives._archive_stats import ArchiveStats
from ribs.archives._array_store import ArrayStore
from ribs.archives._grid_archive import GridArchive
from ribs.archives._utils import (
fill_sentinel_values,
parse_all_dtypes,
validate_cma_mae_settings,
)
from ribs.typing import BatchData, FieldDesc, Float, Int, SingleData
[docs]
class CategoricalArchive(ArchiveBase):
"""An archive where each dimension is divided into categories.
This archive is similar to a :class:`~ribs.archives.GridArchive`, except that each
measure is a categorical variable. Just like GridArchive, it can be visualized as an
n-dimensional grid in the measure space that is divided into cells along each
dimension. Each cell contains an elite, i.e., a solution that *maximizes* the
objective function and has measures that lie within that cell. This archive also
implements the idea of *soft archives* that have *thresholds*, as introduced in
`Fontaine 2023 <https://arxiv.org/abs/2205.10752>`_.
By default, this archive stores the following data fields: ``solution``,
``objective``, ``measures``, ``threshold``, and ``index``. The ``threshold`` is the
value that a solution's objective value must exceed to be inserted into a cell,
while the integer ``index`` uniquely identifies each cell.
Args:
solution_dim: Dimensionality of the solution space. Scalar or multi-dimensional
solution shapes are allowed by passing an empty tuple or tuple of integers,
respectively.
categories: The name of each category for each dimension of the measure space.
The length of this list is the dimensionality of the measure space. An
example is ``[["A", "B", "C"], ["One", "Two", "Three", "Four"]]``, which
defines a 2D measure space where the first dimension has categories ``["A",
"B", "C"]`` and the second has categories ``["One", "Two", "Three",
"Four"]``. While any object can be used for the category name, strings are
expected to be the typical use case.
learning_rate: The learning rate for threshold updates. Defaults to 1.0.
threshold_min: The initial threshold value for all the cells.
qd_score_offset: Archives often contain negative objective values, and if the QD
score were to be computed with these negative objectives, the algorithm
would be penalized for adding new cells with negative objectives. Thus, a
standard practice is to normalize all the objectives so that they are
non-negative by introducing an offset. This QD score offset will be
*subtracted* from all objectives in the archive, e.g., if your objectives go
as low as -300, pass in -300 so that each objective will be transformed as
``objective - (-300)``.
seed: Value to seed the random number generator. Set to None to avoid a fixed
seed.
solution_dtype: Data type of the solutions. Defaults to float64.
objective_dtype: Data type of the objectives. Defaults to float64.
measures_dtype: Data type of the measures. Defaults to object.
dtype: Shortcut for providing data type of the solutions and objectives.
Defaults to float64 (numpy's default floating point type). This parameter
sets the two dtypes simultaneously and does not set the dtype for the
measures. To set individual dtypes, pass ``solution_dtype``,
``objective_dtype``, and ``measures_dtype``. Note that ``dtype`` cannot be
used at the same time as those parameters.
extra_fields: Description of extra fields of data that are stored next to elite
data like solutions and objectives. The description is a dict mapping from a
field name (str) to a tuple of ``(shape, dtype)``. For instance, ``{"foo":
((), np.float32), "bar": ((10,), np.float32)}`` will create a "foo" field
that contains scalar values and a "bar" field that contains 10D values. Note
that field names must be valid Python identifiers, and names already used in
the archive are not allowed.
Raises:
ValueError: Invalid values for learning_rate and threshold_min.
ValueError: Invalid names in extra_fields.
"""
def __init__(
self,
*,
solution_dim: Int | tuple[Int, ...],
categories: Collection[Collection[Hashable]],
learning_rate: Float | None = None,
threshold_min: Float = -np.inf,
qd_score_offset: Float = 0.0,
seed: Int | None = None,
solution_dtype: DTypeLike = None,
objective_dtype: DTypeLike = None,
measures_dtype: DTypeLike = None,
dtype: DTypeLike = None,
extra_fields: FieldDesc | None = None,
) -> None:
self._rng = np.random.default_rng(seed)
self._categories = [list(measure_dim) for measure_dim in categories]
self._dims = np.array(
[len(measure_dim) for measure_dim in categories], dtype=np.int32
)
ArchiveBase.__init__(
self,
solution_dim=solution_dim,
objective_dim=(),
measure_dim=len(self._categories),
)
# Set up the ArrayStore, which is a data structure that stores all the elites'
# data in arrays sharing a common index.
extra_fields = extra_fields or {}
reserved_fields = {"solution", "objective", "measures", "threshold", "index"}
if reserved_fields & extra_fields.keys():
raise ValueError(
"The following names are not allowed in "
f"extra_fields: {reserved_fields}"
)
# measures_dtype can only be set if individual dtypes are used, so we pass it
# into parse_all_dtypes to check that it is unused, but we ignore the
# measures_dtype output by parse_all_dtypes since measures_dtype needs to
# default to object.
solution_dtype, objective_dtype, _ = parse_all_dtypes(
dtype, solution_dtype, objective_dtype, measures_dtype, np
)
measures_dtype = object if measures_dtype is None else measures_dtype
self._store = ArrayStore(
field_desc={
"solution": (self.solution_dim, solution_dtype),
"objective": ((), objective_dtype),
"measures": (self.measure_dim, measures_dtype),
# Must be same dtype as the objective since they share calculations.
"threshold": ((), objective_dtype),
**extra_fields,
},
capacity=np.prod(self._dims),
)
# Set up constant properties.
self._category_to_idx = [
# Map from the category names in each dimension to integer indices.
dict(zip(measure_dim, range(len(measure_dim)), strict=True))
for measure_dim in categories
]
self._learning_rate, self._threshold_min = validate_cma_mae_settings(
learning_rate, threshold_min, self.dtypes["threshold"]
)
self._qd_score_offset = np.asarray(
qd_score_offset, dtype=self.dtypes["objective"]
)
# Set up statistics -- objective_sum is the sum of all objective values in the
# archive; it is useful for computing qd_score and obj_mean.
self._best_elite = None
self._objective_sum = None
self._stats = None
self._stats_reset()
## Properties inherited from ArchiveBase ##
@property
def field_list(self) -> list[str]:
return self._store.field_list_with_index
@property
def dtypes(self) -> dict[str, np.dtype]:
return self._store.dtypes_with_index
@property
def stats(self) -> ArchiveStats:
return self._stats
@property
def empty(self) -> bool:
return len(self._store) == 0
## Properties that are not in ArchiveBase ##
## Roughly ordered by the parameter list in the constructor. ##
@property
def best_elite(self) -> SingleData:
"""The elite with the highest objective in the archive.
None if there are no elites in the archive.
.. note::
If the archive is non-elitist (this occurs when using the archive with a
learning rate which is not 1.0, as in CMA-MAE), then this best elite may no
longer exist in the archive because it was replaced with an elite with a
lower objective value. This can happen because in non-elitist archives, new
solutions only need to exceed the *threshold* of the cell they are being
inserted into, not the *objective* of the elite currently in the cell. See
:pr:`314` for more info.
.. note::
The best elite will contain a "threshold" key. This threshold is the
threshold of the best elite's cell after the best elite was inserted into
the archive.
"""
return self._best_elite
@property
def categories(self) -> list[list[Hashable]]:
"""The categories in each dimension of the measure space."""
return self._categories
@property
def dims(self) -> np.ndarray:
"""(:attr:`measure_dim`,) array listing the number of cells in each dimension."""
return self._dims
@property
def cells(self) -> Int:
"""Total number of cells in the archive."""
return self._store.capacity
@property
def learning_rate(self) -> float:
"""The learning rate for threshold updates."""
return self._learning_rate
@property
def threshold_min(self) -> float:
"""The initial threshold value for all the cells."""
return self._threshold_min
@property
def qd_score_offset(self) -> float:
"""Subtracted from objective values when computing the QD score."""
return self._qd_score_offset
## dunder methods ##
def __len__(self) -> int:
return len(self._store)
def __iter__(self) -> Iterator[SingleData]:
return iter(self._store)
## Utilities ##
def _stats_reset(self) -> None:
"""Resets the archive stats."""
self._best_elite = None
self._objective_sum = np.asarray(0.0, dtype=self.dtypes["objective"])
self._stats = ArchiveStats(
num_elites=0,
coverage=np.asarray(0.0, dtype=self.dtypes["objective"]),
qd_score=np.asarray(0.0, dtype=self.dtypes["objective"]),
norm_qd_score=np.asarray(0.0, dtype=self.dtypes["objective"]),
obj_max=None,
obj_mean=None,
)
def _stats_update(self, new_objective_sum: Float, new_best_index: Float) -> None:
"""Updates statistics.
Update is based on a new sum of objective values (new_objective_sum) and the
index of a potential new best elite (new_best_index).
"""
_, new_best_elite = self._store.retrieve([new_best_index])
new_best_elite = {k: v[0] for k, v in new_best_elite.items()}
if (
self._stats.obj_max is None
or new_best_elite["objective"] > self._stats.obj_max
):
self._best_elite = new_best_elite
new_obj_max = new_best_elite["objective"]
else:
new_obj_max = self._stats.obj_max
self._objective_sum = new_objective_sum
new_qd_score = (
self._objective_sum
- np.asarray(len(self), dtype=self.dtypes["objective"])
* self._qd_score_offset
)
self._stats = ArchiveStats(
num_elites=len(self),
coverage=np.asarray(len(self) / self.cells, dtype=self.dtypes["objective"]),
qd_score=new_qd_score,
norm_qd_score=np.asarray(
new_qd_score / self.cells, dtype=self.dtypes["objective"]
),
obj_max=new_obj_max,
obj_mean=np.asarray(
self._objective_sum / len(self), dtype=self.dtypes["objective"]
),
)
[docs]
def index_of(self, measures: ArrayLike) -> np.ndarray:
"""Returns archive indices for the given batch of measures.
This is by done by mapping from the category name to the cell indices, and then
converting to integer indices with :meth:`grid_to_int_index`.
Args:
measures: (batch_size, :attr:`measure_dim`) array of coordinates/categories
in measure space.
Returns:
(batch_size,) array of integer indices representing the flattened grid
coordinates.
Raises:
ValueError: ``measures`` is not of shape (batch_size, :attr:`measure_dim`).
ValueError: ``measures`` has non-finite values (inf or NaN).
"""
measures = np.asarray(measures, dtype=self.dtypes["measures"])
check_batch_shape(measures, "measures", self.measure_dim, "measure_dim")
grid_indices = [
[self._category_to_idx[i][m] for i, m in enumerate(measure)]
for measure in measures
]
return self.grid_to_int_index(grid_indices)
[docs]
def index_of_single(self, measures: ArrayLike) -> Int:
"""Returns the index of the measures for one solution.
See :meth:`index_of`.
Args:
measures: (:attr:`measure_dim`,) array of measures for a single solution.
Returns:
Integer index of the measures in the archive's storage arrays.
Raises:
ValueError: ``measures`` is not of shape (:attr:`measure_dim`,).
ValueError: ``measures`` has non-finite values (inf or NaN).
"""
measures = np.asarray(measures, dtype=self.dtypes["measures"])
check_shape(measures, "measures", self.measure_dim, "measure_dim")
return self.index_of(measures[None])[0]
# Copy these methods from GridArchive.
int_to_grid_index = GridArchive.int_to_grid_index
grid_to_int_index = GridArchive.grid_to_int_index
## Methods for writing to the archive ##
@staticmethod
def _compute_thresholds(
indices: np.ndarray,
objective: np.ndarray,
cur_threshold: np.ndarray,
learning_rate: float,
dtype: np.dtype,
) -> np.ndarray:
"""Computes new thresholds with the CMA-MAE batch threshold update rule.
If entries in `indices` are duplicated, they receive the same threshold.
"""
if len(indices) == 0:
return np.empty(0, dtype=dtype)
# Compute the number of objectives inserted into each cell. Note that we index
# with `indices` to place the counts at all relevant indices. For instance, if
# we had an array [1,2,3,1,5], we would end up with [2,1,1,2,1] (there are 2
# 1's, 1 2, 1 3, 2 1's, and 1 5).
#
# All objective_sizes should be > 0 since we only retrieve counts for indices in
# `indices`.
objective_sizes = aggregate(indices, 1, func="len", fill_value=0)[indices]
# Compute the sum of the objectives inserted into each cell -- again, we index
# with `indices`.
objective_sums = aggregate(indices, objective, func="sum", fill_value=np.nan)[
indices
]
# Update the threshold with the batch update rule from Fontaine 2023
# (https://arxiv.org/abs/2205.10752).
#
# Unlike in single_entry_with_threshold, we do not need to worry about
# cur_threshold having -np.inf here as a result of threshold_min being -np.inf.
# This is because the case with threshold_min = -np.inf is handled separately
# since we compute the new threshold based on the max objective in each cell in
# that case.
ratio = np.asarray(1.0 - learning_rate, dtype=dtype) ** objective_sizes
new_threshold = ratio * cur_threshold + (objective_sums / objective_sizes) * (
1 - ratio
)
return new_threshold
[docs]
def add(
self,
solution: ArrayLike,
objective: ArrayLike,
measures: ArrayLike,
**fields: ArrayLike,
) -> BatchData:
"""Inserts a batch of solutions into the archive.
Each solution is only inserted if it has a higher ``objective`` than the
threshold of the corresponding cell. For the default values of ``learning_rate``
and ``threshold_min``, this threshold is simply the objective value of the elite
previously in the cell. If multiple solutions in the batch end up in the same
cell, we only insert the solution with the highest objective. If multiple
solutions end up in the same cell and tie for the highest objective, we insert
the solution that appears first in the batch.
For the default values of ``learning_rate`` and ``threshold_min``, the threshold
for each cell is updated by taking the maximum objective value among all the
solutions that landed in the cell, resulting in the same behavior as in the
vanilla MAP-Elites archive. However, for other settings, the threshold is
updated with the batch update rule described in the appendix of `Fontaine 2023
<https://arxiv.org/abs/2205.10752>`_.
.. note:: The indices of all arguments should "correspond" to each other, i.e.,
``solution[i]``, ``objective[i]``, and ``measures[i]`` should be the
solution parameters, objective, and measures for solution ``i``.
Args:
solution: (batch_size, :attr:`solution_dim`) array of solution parameters.
objective: (batch_size,) array with objective function evaluations of the
solutions.
measures: (batch_size, :attr:`measure_dim`) array with measure space
coordinates of all the solutions.
fields: Additional data for each solution. Each argument should be an array
with batch_size as the first dimension.
Returns:
Information describing the result of the add operation. The dict contains
the following keys:
- ``"status"`` (:class:`numpy.ndarray` of :class:`numpy.int32`): An array of
integers that represent the "status" obtained when attempting to insert
each solution in the batch. Each item has the following possible values:
- ``0``: The solution was not added to the archive.
- ``1``: The solution improved the objective value of a cell which was
already in the archive.
- ``2``: The solution discovered a new cell in the archive.
All statuses (and values, below) are computed with respect to the
*current* archive. For example, if two solutions both introduce the same
new archive cell, then both will be marked with ``2``.
The alternative is to depend on the order of the solutions in the batch --
for example, if we have two solutions ``a`` and ``b`` that introduce the
same new cell in the archive, ``a`` could be inserted first with status
``2``, and ``b`` could be inserted second with status ``1`` because it
improves upon ``a``. However, our implementation does **not** do this.
To convert statuses to a more semantic format, cast all statuses to
:class:`AddStatus`, e.g., with ``[AddStatus(s) for s in
add_info["status"]]``.
- ``"value"`` (:class:`numpy.ndarray` of :attr:`dtypes` ["objective"]): An
array with values for each solution in the batch. With the default values
of ``learning_rate = 1.0`` and ``threshold_min = -np.inf``, the meaning of
each value depends on the corresponding ``status`` and is identical to
that in CMA-ME (`Fontaine 2020 <https://arxiv.org/abs/1912.02400>`_):
- ``0`` (not added): The value is the "negative improvement," i.e., the
objective of the solution passed in minus the objective of the elite
still in the archive (this value is negative because the solution did
not have a high enough objective to be added to the archive).
- ``1`` (improve existing cell): The value is the "improvement," i.e., the
objective of the solution passed in minus the objective of the elite
previously in the archive.
- ``2`` (new cell): The value is just the objective of the solution.
In contrast, for other values of ``learning_rate`` and ``threshold_min``,
each value is equivalent to the objective value of the solution minus the
threshold of its corresponding cell in the archive.
Raises:
ValueError: The array arguments do not match their specified shapes.
ValueError: ``objective`` or ``measures`` has non-finite values (inf or
NaN).
"""
data = validate_batch(
self,
{
"solution": solution,
"objective": objective,
"measures": measures,
**fields,
},
)
# Delete these so that we only use the clean, validated data in `data`.
del solution, objective, measures, fields
# Information to return about the addition.
add_info = {}
# Retrieve indices of the archive cells.
indices = self.index_of(data["measures"])
batch_size = len(indices)
# Retrieve current data and thresholds. Unoccupied cells default to
# threshold_min.
cur_occupied, cur_data = self._store.retrieve(indices)
cur_threshold = cur_data["threshold"]
cur_threshold[~cur_occupied] = self.threshold_min
# Compute status -- arrays below are all boolean arrays of length batch_size.
#
# When we want CMA-ME behavior, the threshold defaults to -inf for new cells,
# which satisfies the condition for can_insert.
can_insert = data["objective"] > cur_threshold
is_new = can_insert & ~cur_occupied
improve_existing = can_insert & cur_occupied
add_info["status"] = np.zeros(batch_size, dtype=np.int32)
add_info["status"][is_new] = 2
add_info["status"][improve_existing] = 1
# If threshold_min is -inf, then we want CMA-ME behavior, which computes the
# improvement value of new solutions w.r.t zero. Otherwise, we compute
# improvement with respect to threshold_min.
cur_threshold[is_new] = (
0.0 if self.threshold_min == -np.inf else self.threshold_min
)
add_info["value"] = data["objective"] - cur_threshold
# Return early if we cannot insert anything -- continuing throws a ValueError in
# aggregate() since index[can_insert] would be empty.
if not np.any(can_insert):
return add_info
# Select all solutions that _can_ be inserted -- at this point, there are still
# conflicts in the insertions, e.g., multiple solutions can map to index 0.
indices = indices[can_insert]
data = {name: arr[can_insert] for name, arr in data.items()}
cur_threshold = cur_threshold[can_insert]
# Compute the new threshold associated with each entry.
if self.threshold_min == -np.inf:
# Regular archive behavior: thresholds are just the objectives.
new_threshold = data["objective"]
else:
# Batch threshold update described in Fontaine 2023
# (https://arxiv.org/abs/2205.10752). This computation is based on the mean
# objective of all solutions in the batch that could have been inserted into
# each cell.
new_threshold = self._compute_thresholds(
indices,
data["objective"],
cur_threshold,
self.learning_rate,
self.dtypes["threshold"],
)
# Retrieve indices of solutions that _should_ be inserted into the archive.
# Currently, multiple solutions may be inserted at each archive index, but we
# only want to insert the maximum among these solutions. Thus, we obtain the
# argmax for each archive index.
#
# We use a fill_value of -1 to indicate archive indices that were not covered in
# the batch. Note that the length of archive_argmax is only max(indices), rather
# than the total number of grid cells. However, this is okay because we only
# need the indices of the solutions, which we store in should_insert.
#
# aggregate() always chooses the first item if there are ties, so the first
# elite will be inserted if there is a tie. See their default numpy
# implementation for more info:
# https://github.com/ml31415/numpy-groupies/blob/master/numpy_groupies/aggregate_numpy.py#L107
archive_argmax = aggregate(
indices, data["objective"], func="argmax", fill_value=-1
)
should_insert = archive_argmax[archive_argmax != -1]
# Select only solutions that will be inserted into the archive.
indices = indices[should_insert]
data = {name: arr[should_insert] for name, arr in data.items()}
data["threshold"] = new_threshold[should_insert]
# Insert elites into the store.
self._store.add(indices, data)
# Compute statistics.
cur_objective = cur_data["objective"]
cur_objective[~cur_occupied] = 0.0
cur_objective = cur_objective[can_insert][should_insert]
objective_sum = self._objective_sum + np.sum(data["objective"] - cur_objective)
best_index = indices[np.argmax(data["objective"])]
self._stats_update(objective_sum, best_index)
return add_info
[docs]
def add_single(
self,
solution: ArrayLike,
objective: ArrayLike,
measures: ArrayLike,
**fields: ArrayLike,
) -> SingleData:
"""Inserts a single solution into the archive.
The solution is only inserted if it has a higher ``objective`` than the
threshold of the corresponding cell. For the default values of ``learning_rate``
and ``threshold_min``, this threshold is simply the objective value of the elite
previously in the cell. The threshold is also updated if the solution was
inserted.
.. note::
This method is provided as an easier-to-understand implementation
that has less performance due to inserting only one solution at a
time. For better performance, see :meth:`add`.
Args:
solution: Parameters of the solution.
objective: Objective function evaluation of the solution.
measures: Coordinates in measure space of the solution.
fields: Additional data for the solution.
Returns:
Information describing the result of the add operation. The dict contains
``status`` and ``value`` keys; refer to :meth:`add` for the meaning of
status and value.
Raises:
ValueError: The array arguments do not match their specified shapes.
ValueError: ``objective`` is non-finite (inf or NaN) or ``measures``
has non-finite values.
"""
data = validate_single(
self,
{
"solution": solution,
"objective": objective,
"measures": measures,
**fields,
},
)
# Delete these so that we only use the clean, validated data in `data`.
del solution, objective, measures, fields
# Information to return about the addition.
add_info = {}
# Identify the archive cell.
index = self.index_of_single(data["measures"])
# Retrieve current data of the cell.
cur_occupied, cur_data = self._store.retrieve([index])
cur_occupied = cur_occupied[0]
if cur_occupied:
# If the cell is currently occupied, the threshold comes from the current
# data of the elite in the cell.
cur_threshold = cur_data["threshold"][0]
else:
# If the cell is not currently occupied, the threshold needs special
# settings.
#
# If threshold_min is -inf, then we want CMA-ME behavior, which computes the
# improvement value with a threshold of zero for new solutions. Otherwise,
# we will set cur_threshold to threshold_min.
cur_threshold = (
np.asarray(0.0, self.dtypes["threshold"])
if self.threshold_min == -np.inf
else self.threshold_min
)
# Retrieve candidate objective.
objective = data["objective"]
# Compute status and threshold.
add_info["status"] = np.int32(0) # NOT_ADDED
# Now we check whether a solution should be added to the archive. We use the
# addition rule from MAP-Elites (Fig. 2 of Mouret 2015
# https://arxiv.org/pdf/1504.04909.pdf), with modifications for CMA-MAE.
# This checks if a new solution is discovered in the archive. Note that regular
# MAP-Elites only checks `not cur_occupied`. CMA-MAE has an additional
# `threshold_min` that the objective must exceed for new cells. If CMA-MAE is
# not being used, then `threshold_min` is -np.inf, making this check identical
# to that of MAP-Elites.
is_new = not cur_occupied and self.threshold_min < objective
# This checks whether the solution improves an existing cell in the archive,
# i.e., whether it performs better than the current elite in this cell. Vanilla
# MAP-Elites compares to the objective of the cell's current elite. CMA-MAE
# compares to a threshold value that updates over time (i.e., cur_threshold).
# When learning_rate is set to 1.0 (the default value), we recover the same rule
# as in MAP-Elites because cur_threshold is equivalent to the objective of the
# solution in the cell.
improve_existing = cur_occupied and cur_threshold < objective
if is_new or improve_existing:
if improve_existing:
add_info["status"] = np.int32(1) # IMPROVE_EXISTING
else:
add_info["status"] = np.int32(2) # NEW
# This calculation works in the case where threshold_min is -inf because
# cur_threshold will be set to 0.0 instead.
data["threshold"] = (
cur_threshold * (1.0 - self.learning_rate)
+ objective * self.learning_rate
)
# Insert elite into the store.
self._store.add(
index[None],
{name: np.expand_dims(arr, axis=0) for name, arr in data.items()},
)
# Update stats.
cur_objective = (
cur_data["objective"][0]
if cur_occupied
else np.asarray(0.0, dtype=self.dtypes["objective"])
)
self._stats_update(self._objective_sum + objective - cur_objective, index)
# Value is the improvement over the current threshold (can be negative).
add_info["value"] = objective - cur_threshold
return add_info
[docs]
def clear(self) -> None:
"""Removes all elites in the archive."""
self._store.clear()
self._stats_reset()
## Methods for reading from the archive ##
## Refer to ArchiveBase for documentation of these methods. ##
[docs]
def retrieve(self, measures: ArrayLike) -> tuple[np.ndarray, BatchData]:
measures = np.asarray(measures, dtype=self.dtypes["measures"])
check_batch_shape(measures, "measures", self.measure_dim, "measure_dim")
occupied, data = self._store.retrieve(self.index_of(measures))
fill_sentinel_values(occupied, data)
return occupied, data
[docs]
def retrieve_single(self, measures: ArrayLike) -> tuple[bool, SingleData]:
measures = np.asarray(measures, dtype=self.dtypes["measures"])
check_shape(measures, "measures", self.measure_dim, "measure_dim")
occupied, data = self.retrieve(measures[None])
return occupied[0], {field: arr[0] for field, arr in data.items()}
@overload
def data(
self,
fields: str,
return_type: Literal["dict", "tuple", "pandas"] = "dict",
) -> np.ndarray: ...
@overload
def data(
self,
fields: None | Collection[str] = None,
return_type: Literal["dict"] = "dict",
) -> BatchData: ...
@overload
def data(
self,
fields: None | Collection[str] = None,
return_type: Literal["tuple"] = "tuple",
) -> tuple[np.ndarray]: ...
@overload
def data(
self,
fields: None | Collection[str] = None,
return_type: Literal["pandas"] = "pandas",
) -> ArchiveDataFrame: ...
[docs]
def data(
self,
fields: None | Collection[str] | str = None,
return_type: Literal["dict", "tuple", "pandas"] = "dict",
) -> np.ndarray | BatchData | tuple[np.ndarray] | ArchiveDataFrame:
return self._store.data(fields, return_type)
[docs]
def sample_elites(self, n: Int, replace: bool = True) -> BatchData:
if self.empty:
raise IndexError("No elements in archive.")
if not replace and n > len(self._store):
raise ValueError(
"Cannot take a larger sample than the number of elites "
"in the archive when 'replace=False'"
)
random_indices = self._rng.choice(len(self._store), size=n, replace=replace)
selected_indices = self._store.occupied_list[random_indices]
_, elites = self._store.retrieve(selected_indices)
return elites